SNP Profiles of EET 400 View Data

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_Input profile	CC	AG	CC	TT	CT	AA	TT	GT	CT	CC	AA	GG	CC	AA
1._EET_400_[ECU]	CC	AG	CC	TT	CT	AA	TT	GT	CT	CC	AA	GG	CC	AA
2._GC-01-066-4-02	CC	AG	CC	TT	CT	AA	TT	GT	CT	CC	AA	GG	CC	AA
3._GC-01-066-4-02	CC	AG	CC	TT	CT	AA	TT	GT	CT	CC	AA	GG	CC	AA
4._GC-01-066-4-02	CC	AG	CC	TT	CT	AA	TT	GT	CT	CC	AA	GG	CC	AA
5._EET_400_[ECU]	CC	AG	CC	TT	CT	AA	TT	GT	CT	CC	AA	GG	CC	AA
6._EET_400_[ECU]	CC	AG	CC	TT	CT	AC	TT	GT	CT	CC	AA	GG	CC	AA
7._RUQ_760	CC	AG	CC	TT	CT	AC	TT	GT	CT	CC	AA	GG	CC	AG
8._EET_400_[ECU]	_	AG	CC	TT	_	AC	TT	GT	CT	_	_	GG	CC	AA
9._RUQ_760	_	AG	CC	TT	_	_	_	GT	_	_	_	_	CC	AA
10._EET_400_[ECU]	CC	AG	GG	CC	TT	CC	TT	TT	CC	CC	AA	GG	CC	AG
11._GC-01-066-4-02	CC	AA	GG	TT	TT	_	TT	TT	CC	CC	AA	GG	CC	GG
12._EET_400_[ECU]	CC	AA	GG	TT	TT	_	TT	TT	CC	CC	AA	GG	CC	GG
13._GC-01-066-4-02	CC	AA	GG	TT	TT	_	TT	TT	CC	CC	AA	GG	CC	GG
14._EET_400_[ECU]	CC	AA	GG	TT	TT	_	TT	TT	CC	CC	AA	GG	CC	GG
15._GC-01-066-4-02	CC	AA	GG	TT	TT	_	TT	TT	CC	CC	AA	GG	CC	GG
16._GC-01-066-4-02	CC	AA	GG	TT	TT	_	TT	TT	CC	CC	AA	GG	CC	GG
17._GC-01-066-4-02	CC	AA	GG	TT	TT	_	TT	TT	CC	CC	AA	GG	CC	GG
18._EET_400_[ECU]	CC	AA	GG	TT	TT	_	TT	TT	CC	CC	AA	GG	CC	GG
19._EET_400_[ECU]	CC	AA	GG	TT	TT	_	TT	TT	CC	CC	AA	GG	CC	GG
20._EET_400_[ECU]	CC	AA	GG	TT	TT	_	TT	TT	CC	CC	AA	GG	CC	GG
21._MITC-000396	GG	AA	CG	AG	AG	AA	AG	AC	_	_	AA	GG	GG	AA
22._EET_400_[ECU]_Fld#_153_Plt#_2	GG	AA	CG	AG	AG	CC	AA	AC	_	_	AA	GG	GG	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AA	CG	CT	CT	CG	GG	AA	CT	AC	GG	GG	CT	AC
1._EET_400_[ECU]	TT	AA	CG	CT	CT	CG	GG	AA	CT	AC	GG	GG	CT	AC
2._GC-01-066-4-02	TT	AA	CG	CT	CT	CG	GG	AA	CT	AC	GG	GG	CT	AC
3._GC-01-066-4-02	TT	AA	CG	CT	CT	CG	GG	AA	CT	AC	GG	GG	CT	AC
4._GC-01-066-4-02	TT	AA	CG	CT	CT	CG	GG	AA	CT	AC	GG	GG	CT	AC
5._EET_400_[ECU]	TT	AA	CG	CT	CT	CG	GG	AA	CT	AC	GG	GG	CT	AC
6._EET_400_[ECU]	TT	AA	CG	CT	CT	CG	GG	AA	CT	AC	GG	GG	CT	AC
7._RUQ_760	TT	AA	CG	CT	CT	CG	GG	AA	CT	AC	GG	GG	CT	AC
8._EET_400_[ECU]	TT	AA	CG	CT	CT	CG	GG	AA	CT	AC	GG	GG	CT	AC
9._RUQ_760	_	_	_	_	TT	CG	GG	_	CT	AC	CG	GG	CT	AC
10._EET_400_[ECU]	CT	AA	CG	TT	CC	GG	GG	AA	TT	CC	GG	TT	CC	AC
11._GC-01-066-4-02	TT	AA	GG	TT	TT	CG	GG	AA	CC	AA	GG	TT	CC	CC
12._EET_400_[ECU]	TT	AA	GG	TT	TT	CG	GG	AA	CC	AA	GG	TT	CC	CC
13._GC-01-066-4-02	TT	AA	GG	TT	TT	CG	GG	AA	CC	AA	GG	TT	CC	CC
14._EET_400_[ECU]	TT	AA	GG	TT	TT	CG	GG	AA	CC	AA	GG	TT	CC	CC
15._GC-01-066-4-02	TT	AA	GG	TT	TT	CG	GG	AA	CC	AA	GG	TT	CC	CC
16._GC-01-066-4-02	TT	AA	GG	TT	TT	CG	GG	AA	CC	AA	GG	TT	CC	CC
17._GC-01-066-4-02	TT	AA	GG	TT	TT	CG	GG	AA	CC	AA	GG	TT	CC	CC
18._EET_400_[ECU]	TT	AA	GG	TT	TT	CG	GG	AA	CC	AA	GG	TT	CC	CC
19._EET_400_[ECU]	TT	AA	GG	TT	TT	CG	GG	AA	CC	AA	GG	TT	CC	CC
20._EET_400_[ECU]	TT	AA	GG	TT	TT	CG	GG	AA	CC	AA	GG	TT	CC	CC
21._MITC-000396	AA	AT	CC	GG	AG	CC	CC	_	AA	AC	CG	CC	_	AC
22._EET_400_[ECU]_Fld#_153_Plt#_2	AG	AT	GG	AG	AG	GG	AC	_	AG	AC	CG	CC	_	AC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AG	GG	AA	CT	AG	CC	CC	CT	GT	AC	AT	GG	X_X	X_X
1._EET_400_[ECU]	AG	GG	AA	CT	AG	CC	CC	CT	GT	AC	AT	GG	X_X	X_X
2._GC-01-066-4-02	AG	GG	AA	CT	AG	CC	CC	CT	GT	AC	AT	GG	X_X	X_X
3._GC-01-066-4-02	AG	GG	AA	CT	AG	CC	CC	CT	GT	AC	AT	GG	X_X	X_X
4._GC-01-066-4-02	AG	GG	AA	CT	AG	CC	CC	CT	GT	AC	AT	GG	X_X	X_X
5._EET_400_[ECU]	AG	GG	AA	CT	AG	CC	CC	CT	GT	AC	AT	GG	X_X	X_X
6._EET_400_[ECU]	AG	GG	AA	CT	AG	CC	CC	CT	GT	AC	AT	GG	X_X	X_X
7._RUQ_760	AG	GG	AA	CT	AG	CC	CC	CT	GT	AC	AT	GG	X_X	X_X
8._EET_400_[ECU]	AG	GG	AA	CC	AG	_	CC	CT	GT	AC	AT	GG	X_X	X_X
9._RUQ_760	AG	_	AA	CT	AG	CC	CC	CT	GT	AC	_	_	X_X	X_X
10._EET_400_[ECU]	AA	GG	AA	CC	AA	CC	AC	CT	GG	AC	AT	GG	X_X	X_X
11._GC-01-066-4-02	AA	GG	AA	CC	GG	CC	AA	CT	GG	AA	TT	GG	X_X	X_X
12._EET_400_[ECU]	AA	GG	AA	CC	GG	CC	AA	CT	GG	AA	TT	GG	X_X	X_X
13._GC-01-066-4-02	AA	GG	AA	CC	GG	CC	AA	_	GG	AA	TT	GG	X_X	X_X
14._EET_400_[ECU]	AA	GG	AA	CC	GG	CC	AA	_	GG	AA	TT	GG	X_X	X_X
15._GC-01-066-4-02	AA	GG	AA	CC	GG	CC	AA	CC	GG	AA	TT	GG	X_X	X_X
16._GC-01-066-4-02	AA	GG	AA	CC	GG	CC	AA	CC	GG	AA	TT	GG	X_X	X_X
17._GC-01-066-4-02	AA	GG	AA	CC	GG	CC	AA	CC	GG	AA	TT	GG	X_X	X_X
18._EET_400_[ECU]	AA	GG	AA	CC	GG	CC	AA	CC	GG	AA	TT	GG	X_X	X_X
19._EET_400_[ECU]	AA	GG	AA	CC	GG	CC	AA	CC	GG	AA	TT	GG	X_X	X_X
20._EET_400_[ECU]	AA	GG	AA	CC	GG	CC	AA	CC	GG	AA	TT	GG	X_X	X_X
21._MITC-000396	_	AG	AA	AG	AG	GG	CC	AA	AA	CC	AT	CG	X_X	X_X
22._EET_400_[ECU]_Fld#_153_Plt#_2	_	AG	AA	AG	AG	GG	CC	AA	AC	AC	AA	CG	X_X	X_X

Input profile: EET_400_[ECU]

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Mars Center for Cocoa Science, Brazil

Location: 1402 9

Dapeng Zhang, 2016

1._EET_400_[ECU]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1402 3

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

2._EET_400_[ECU] GC-01-066-4-02

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13 > FP3

3._EET_400_[ECU] GC-01-066-4-02

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

4._EET_400_[ECU] GC-01-066-4-02

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

5._EET_400_[ECU]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1402 13 > F

Dapeng Zhang, 2016

6._EET_400_[ECU]

98.8 %
40 shared markers

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Estation Experimental Tropical Pichilingue, Ecuador

Location: OCHO CASAS #1

Dapeng Zhang, 2016

7._EET_400_[ECU] RUQ_760

97.5 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

8._EET_400_[ECU]

97.1 %
35 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

9._EET_400_[ECU] RUQ_760

95.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

10._EET_400_[ECU]

70 %
40 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: Plot85/Trial II 2B

Dapeng Zhang, 2016

11._EET_400_[ECU] GC-01-066-4-02

67.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

12._EET_400_[ECU]

67.9 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1402 5

Dapeng Zhang, 2016

13._EET_400_[ECU] GC-01-066-4-02

67.1 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10 > FP2

14._EET_400_[ECU]

67.1 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1402 10 > F

Dapeng Zhang, 2016

15._EET_400_[ECU] GC-01-066-4-02

66.7 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

16._EET_400_[ECU] GC-01-066-4-02

66.7 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

17._EET_400_[ECU] GC-01-066-4-02

66.7 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

18._EET_400_[ECU]

66.7 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1402 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

19._EET_400_[ECU]

66.7 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1402 7

Dapeng Zhang, 2016

20._EET_400_[ECU]

66.7 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1402 1 > FP

Dapeng Zhang, 2016

21._EET_400_[ECU] MITC-000396

41.4 %
35 shared markers

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USDA-SHRS, United States of America

22._EET_400_[ECU] EET_400_[ECU]_Fld#_153_Plt#_2

38.6 %
35 shared markers

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USDA-TARS, United States of America

Location: Field: 153, Tree: 2

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25